Victors

rpoN
Victor ID	813
Gene Name	rpoN
Sequence Strain (Species/Organism)	Campylobacter jejuni subsp. jejuni NCTC 11168
NCBI Gene ID	904991
NCBI Protein GI	218562314
Locus Tag	Cj0670
Genbank Accession	AL111168
Protein Accession	YP_002344093
Other Database IDs	UniProtKB-ID: Q0PAK4_CAMJE UniRef100: UniRef100_A5KHB4 UniRef90: UniRef90_Q5HVA5 UniRef50: UniRef50_Q9ZLC8 UniParc: UPI00000C1CE4 EMBL: AL111168 EMBL-CDS: CAL34810.1 RefSeq_NT: NC_002163.1 GenomeReviews: AL111168_GR KEGG: cje:Cj0670 HOGENOM: HBG393625 OMA: EYQYDFF ProtClustDB: PRK05932 BioCyc: CJEJ192222:CJ0670-MONOMER
Taxonomy ID	192222
Gene Starting Position	624137
Gene Ending Position	625387
Gene Strand (Orientation)	+
Protein Name	RNA polymerase factor sigma-54
Protein pI	4.89
Protein Weight	46686.93
Protein Length	416
Protein Note	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
DNA Sequence	>gi\|15791399:624137-625387 Campylobacter jejuni subsp. jejuni NCTC 11168 chromosome, complete genome GATGTTAAAGCAAAAAATCACCCAAGCACCTAAGACTAAAATTTCTCAAACTTTACGCTCTTGGTTGCCG ATTTTACAAGCAAATATAGAGGATTTAAAAGAAAATTTAGATAAATTTGCTGAGGATAATCCTTTCTTAA ATGTTCAAGATTCGATACAAACTCATGATAAGGGTAAGAATTATTTTGATTCATTTTATAAACATAATGT AAATTCGGCTTTTGTGGATAGTAAAGGACTTGCCAAAAAAAGTGTTTATGAGCTTTTAAATGAACAGATT CTTCCTCCTTTGTTTCCTACAAGCAAATCTCAAGAACTTGCAAAAAAAATTATAGAATGCTTAAATGAGG AAGGATATTTTGAACACGATGAAGAATTTTTAAAAGAGTATTCTTTGGAAGAAATTGAGCGAGTAAGAGC AAGATTTAAATTTTTAGATCCTGTAGGAGTGGGAGCTAAAGATTATAAAGAAGCATTTTTATTTGCTCTT GAAAATATGGAGTTAGATGAAGATATTGATGAGTTTTGTAGAATGTTGATTATGGATTTTGAAAATATAC AAAACTATACCAAAGAGCCTTTATATAAAGAAGCATTGGCTGTACTTAAGCGTTTTAGCACTCCTCCTTT TTTGGAATATTTTGAAGATTCTCGTATAATTGTTCCTGATATTTTTGTTTATAAAGAAAATGGTGAAATT AAAGTAAAAATCAATGATGATTATTATCCTGAAATTTCAATCCAAACTGATGGTTTAGAGCATGATTTTT TAAGTCATTACATCAAAGAAGCAAAAAATTTAGTTGATGCTTTAGCGATGAGAAAAGCTACTCTTTATAA AATAGGGCTTATGATAGTAGAATATCAATATGATTTTTTCATGGGAAAAGAGATAAAACCTATGACTTTT AAGGATTTAGCACTTGATTTAGAACGCAATGCTTCGACTATATCAAGAGCTGTGGCAAATAAATATTTAA GTTGTGAAAGAGGACTTATTCCCTTGCGTGATTTTTTTGCTTTTGCTCTTGATGAAGAGGGAGAGACTTC AAATGTAGGTGTTAAAGAATTTGTAGCAAATTTAGTAAAGAATGAAGATCGAAATAAACCTTTAAGCGAT AGTAAAATTTTAGAATTAATCAAAGAAGAATTTAAAGTCGATATAGGGCGAAGAACTATTACAAAATATC GCAAACATCTTAATATAGCAAGTTCTACAGATAGAAAAAAATTATATGAACTTGAAGGATA
Protein Sequence	>gi\|218562314\|ref\|YP_002344093.1\| RNA polymerase factor sigma-54 [Campylobacter jejuni subsp. jejuni NCTC 11168] MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNPFLNVQDSIQTHDKGKNYFDSFYKHNV NSAFVDSKGLAKKSVYELLNEQILPPLFPTSKSQELAKKIIECLNEEGYFEHDEEFLKEYSLEEIERVRA RFKFLDPVGVGAKDYKEAFLFALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPF LEYFEDSRIIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKATLYK IGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIPLRDFFAFALDEEGETS NVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRTITKYRKHLNIASSTDRKKLYELEG
Molecule Role	Virulence factor
Molecule Role Annotation	MUTATION: rpoN mutant cells lacked the spiral shape of C. jejuni and motility was reduced to 10% of the wild-type, mutants also showed significant colonization defects of a chicken cecum (Fernando et al., 2007)
References	*Fernando et al., 2007:* Fernando U, Biswas D, Allan B, Willson P, Potter AA. Influence of Campylobacter jejuni fliA, rpoN and flgK genes on colonization of the chicken gut. International journal of food microbiology. 2007; 118(2); 194-200. [PubMed: 17761334].


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rpoN