Documentation:
Publications of PHIDIAS and PHIDIAS programs:
- Lin Y, Xiang Z, He Y. Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology. Journal of Biomedical Semantics. 2011 Oct 31;2(1):9. [Epub ahead of print] PMID: 22041276.
- Zuoshuang Xiang, Yuying Tian, Yongqun He. PHIDIAS: a pathogen-host interaction data integration and analysis system. Genome Biology. 2007 Jul 30;8(7):R150. PMID: 17663773.
- Zuoshuang Xiang, Wenjie Zheng and Yongqun He. BBP: Brucella genome annotation with literature mining and curation. BMC Bioinformatics. 2006 Jul 16;7(1):347. PMID: 16842628.
- Yongqun He, Howard G. Rush, Rachel S. Liepman, Zuoshuang Xiang, Lesley A. Colby. Pathobiology and management of laboratory rodents administered CDC Category A agents. Comparative Medicine. 2007. Feb;57(1):18-32. PMID: 17348288.
Example on how to use PHIDIAS:
The following is an example shows the basic usage of the modules PHIDIAS.
1. Victors: Virulence Factors database
Please see related information in the Victors documentation page.
2. BBP: Brucella Bioinformatisc Portal
Please see related information in the BBP documentation page.
3. Phigen: integrated PHI gene information.
4. Pacodom: pathogen conserved domains.
5. Phinfo: General pathogen-host interaction information.
6. Phinet: PHI network, e.g., pathogenic Escherichia coli pathogenesis network.
