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fimD

Victor ID 3969
Gene Name fimD
Sequence Strain (Species/Organism) Bordetella pertussis Tohama I
NCBI Gene ID 2667435
NCBI Protein GI 33592930
Locus Tag BP1883
Genbank Accession BX640416
Protein Accession NP_880574
Taxonomy ID 257313
Gene Starting Position 1983747
Gene Ending Position 1984844
Gene Strand (Orientation) +
Protein Name fimbrial adhesin
Protein pI 7.33
Protein Weight 36138.4
Protein Length 365
Protein Note Also known as fhaEPreviously sequenced as Bordetella pertussis protein FhaE precursor FhaE or FimD SW:FHAE_BORPE (Q00879) (376 aa) fasta scores: E(): 1.9e-143, 100% id in 365 aa
DNA Sequence 
>gi|33591275:1983747-1984844 Bordetella pertussis Tohama I, complete genome
CGTGCCCGCGCGCGTAATTTCCTTCTGCGGGGCCGCGCTTGCCGTCTGGGCAGGCCTGGCCGTGCAGCCC
GCCATGGCCGTCGATCCGCCGGTGGACTGCGGCCGGGCGCTAGGCTTGCATTTCTGGTCGAGCGCCTCGC
TCATCTCCGACCAGACACCCGATGGGACGCTGATCGGCAAGCCCGTGGTCGGGCGGTCCCTGCTGTCCAA
GAGCTGCAAGGTGCCGGACGACATCAAGGAAGACCTCAGCGACAACCATGACGGCGAACCGGTCGACATC
GTGCTGGAACTGGGCAGTAACTACAAGATCCGGCCGCAGTCCTATGGCCATCCGGGCATCGTGGTCGACT
TGCCGTTCGGCTCCACGGAGGAGACCGGCATCGCCATCTATATCGATTTCGGCAGTTCGCCGATGCAGAA
GGTCGGCGAACGGCAGTGGCTGTATCCCCAGAAAGGCGAAGTGCTTTTCGACGTGCTCACCATCAACGGC
GACAACGCGGAGGTTCGCTATCAGGCGATCAAGGTCGGGCCACTCAAGCGGCCGCGCAAGCTGGTGCTGT
CGCAGTTTCCGAACCTGTTCACCTACAAGTGGGTTTTCATGCGCGGGACCAGCCAGGAGCGCGTGCTGGC
GCAGGGGACCATCGACACCGACGTCGCCACCAGCACCATCGACCTGAAAACCTGCCGCTATACCTCGCAG
ACGGTCAGCCTGCCCATCATCCAGCGTTCCGCGTTGACCGGCGTCGGTACGACCCTGGGGATGACCGATT
TCCAGATGCCGTTCTGGTGCTATGGCTGGCCAAAGGTATCGGTGTACATGAGCGCGACGAAGACGCAGAC
CGGCGTAGACGGCGTGGCGTTGCCGGCGACCGGCCAGGCGGCCGGCATGGCCAGCGGCGTAGGCGTCCAG
TTGATCAACGGCAAGACGCAGCAGCCGGTCAAGCTGGGCCTGCAGGGCAAGATCGCCTTGCCCGAGGCGC
AGCAGACTGAGTCGGCGACGTTCTCGCTGCCCATGAAGGCGCAGTACTACCAGACCTCCACTTCAACCTC
GGCGGGCAAGCTGTCCGTCACCTACGCCGTGACCTTGAACTATGACTG
Protein Sequence 
>gi|33592930|ref|NP_880574.1| fimbrial adhesin [Bordetella pertussis Tohama I]
MPARVISFCGAALAVWAGLAVQPAMAVDPPVDCGRALGLHFWSSASLISDQTPDGTLIGKPVVGRSLLSK
SCKVPDDIKEDLSDNHDGEPVDIVLELGSNYKIRPQSYGHPGIVVDLPFGSTEETGIAIYIDFGSSPMQK
VGERQWLYPQKGEVLFDVLTINGDNAEVRYQAIKVGPLKRPRKLVLSQFPNLFTYKWVFMRGTSQERVLA
QGTIDTDVATSTIDLKTCRYTSQTVSLPIIQRSALTGVGTTLGMTDFQMPFWCYGWPKVSVYMSATKTQT
GVDGVALPATGQAAGMASGVGVQLINGKTQQPVKLGLQGKIALPEAQQTESATFSLPMKAQYYQTSTSTS
AGKLSVTYAVTLNYD
Molecule Role Virulence factor
Molecule Role Annotation MUTATION: FimD mutant strain showed reduced colonization in the lungs and trachea of mice (Smith et al., 2001).
COG COG3539NU, under N: Cell motility; U: Intracellular trafficking, secretion, and vesicular transport
References
Smith et al., 2001: Smith AM, Guzmán CA, Walker MJ. The virulence factors of Bordetella pertussis: a matter of control. FEMS microbiology reviews. 2001; 25(3); 309-333. [PubMed: 11348687].