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hfq

Victor ID 2459
Gene Name hfq
Sequence Strain (Species/Organism) Vibrio cholerae O1 biovar El Tor str. N16961
NCBI Gene ID 2615060
NCBI Protein GI 15640374
Locus Tag VC0347
Protein Accession NP_230001.1
Other Database IDs UniProtKB-ID: HFQ_VIBCH
UniRef100: UniRef100_A5F3L7
UniRef90: UniRef90_A5F3L7
UniRef50: UniRef50_Q31GP2
UniParc: UPI000012C6A9
EMBL: AE003852
EMBL-CDS: AAF93520.1
RefSeq_NT: NC_002505.1
GenomeReviews: AE003852_GR
KEGG: vch:VC0347
TIGR: VC_0347
HOGENOM: HBG645207
OMA: KNTVTQM
ProtClustDB: PRK00395
Taxonomy ID 243277
Chromosome No I
Gene Starting Position 370148
Gene Ending Position 370411
Gene Strand (Orientation) +
Protein Name RNA-binding protein Hfq
DNA Sequence 
>gi|15640032:370148-370411 Vibrio cholerae O1 biovar El Tor str. N16961 chromosome I, complete genome
AATGGCTAAGGGGCAATCTCTACAAGACCCATTTCTGAATGCACTACGTCGTGAACGTATCCCTGTTTCT
ATCTACCTTGTGAACGGCATTAAACTGCAAGGTCAGATCGAATCATTTGATCAATTTGTGATCTTGCTGA
AGAACACAGTAAACCAAATGGTTTACAAGCATGCGATTTCTACTGTGGTTCCTGCTCGTCCAGTTAGCCA
CCACAGCGGCGACCGCCCAGCATCGGATCGTCCAGCAGAGAAGTCTGAAGAGTA
Protein Sequence 
>gi|15640374|ref|NP_230001.1| RNA-binding protein Hfq [Vibrio cholerae O1 biovar El Tor str. N16961] MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAISTVVPARPVSHHSGDRPASDRPAEKSEE
Molecule Role Virulence factor
Molecule Role Annotation MUTATION: hfq mutant fails to colonize the suckling mouse intestine (Ding et al., 2004).
COG COG1923R, under R: General function prediction only
References
Ding et al., 2004: Ding Y, Davis BM, Waldor MK. Hfq is essential for Vibrio cholerae virulence and downregulates sigma expression. Molecular microbiology. 2004; 53(1); 345-354. [PubMed: 15225327].