Search: for Help
About
Introduction
Statistics
Your PHIDIAS
Register or Login
Philert
Submission
Curated Data
Victors
BBP (Brucella)
Phinfo
Phinet
HazARD
Data Analysis
Phigen
Pacodom
BLAST
Help & Documents
Documents
FAQs
Links
Acknowledgements
Disclaimer
Contact Us
UMMS Logo

hfq from Shigella boydii CDC 3083-94

Victor ID 1667
Gene Name hfq from Shigella boydii CDC 3083-94
Sequence Strain (Species/Organism) Shigella boydii CDC 3083-94
NCBI Gene ID 6269919
NCBI Protein GI 187732706
Locus Tag SbBS512_E4703
Protein Accession YP_001882863.1
Other Database IDs UniProtKB-ID: HFQ_SHIB3
UniRef100: UniRef100_B2TY47
UniRef90: UniRef90_B7NGA6
UniRef50: UniRef50_A4W5R3
UniParc: UPI00005F1FD3
EMBL: CP001063
EMBL-CDS: ACD08972.1
RefSeq_NT: NC_010658.1
EnsemblGenome: EBESCG00000070924
EnsemblGenome_TRS: EBESCT00000071877
EnsemblGenome_PRO: EBESCP00000069196
GenomeReviews: CP001063_GR
KEGG: sbc:SbBS512_E4703
HOGENOM: HBG645207
OMA: KNTVTQM
ProtClustDB: PRK00395
Taxonomy ID 344609
Gene Starting Position 4395836
Gene Ending Position 4396144
Gene Strand (Orientation) +
Protein Name RNA chaperone Hfq
DNA Sequence 
>gi|187730020:4395836-4396144 Shigella boydii CDC 3083-94 chromosome, complete genome
AATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCT
ATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGA
AAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGTCCGGTTTCTCA
TCACAGTAACAACGCCAGTGGCGGTACCAGCAGTAACTACCATCATGGTAGCAGCGCGCAGAATACTTCC
GCGCAACAGGACAGCGAAGAAACCGAATA
Protein Sequence 
>gi|187732706|ref|YP_001882863.1| RNA-binding protein Hfq [Shigella boydii CDC 3083-94] MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNASGGTSSNYHHGSSAQNTSAQQDSEETE
Molecule Role Virulence factor
Molecule Role Annotation MUTATION: hfq deletion mutants are attenuated in guinea pig eye infection model (Sereny test) (Chao and Vogel, 2010).
COG COG1923R, under R: General function prediction only
References
Chao and Vogel, 2010: Chao Y, Vogel J. The role of Hfq in bacterial pathogens. Current opinion in microbiology. 2010; 13(1); 24-33. [PubMed: 20080057].